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LOC100827689 probable WRKY transcription factor 29 [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100827689, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100827689
Gene description
probable WRKY transcription factor 29
Locus tag
BRADI_3g34567v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100827689 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 3 NC_016133.3 (36672419..36674566)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 3 NC_016133.2 (36975053..36976735)

Chromosome 3 - NC_016133.3Genomic Context describing neighboring genes Neighboring gene D-xylose-proton symporter-like 2 Neighboring gene probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 Neighboring gene uncharacterized LOC100844694 Neighboring gene protein NRT1/ PTR FAMILY 8.3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable WRKY transcription factor 29

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016133.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    36672419..36674566
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024462396.1 → XP_024318164.1  probable WRKY transcription factor 29 isoform X2

    UniProtKB/TrEMBL
    A0A0Q3FIX1
    Conserved Domains (1) summary
    smart00774
    Location:178 → 236
    WRKY; DNA binding domain

  2. XM_003572088.4 → XP_003572136.1  probable WRKY transcription factor 29 isoform X1

    UniProtKB/TrEMBL
    I1I6K1
    Conserved Domains (1) summary
    smart00774
    Location:181 → 239
    WRKY; DNA binding domain
Nucleotide Protein Strain
Heading Accession and Version

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