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LOC100826107 protein CUP-SHAPED COTYLEDON 1 [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100826107, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100826107
Gene description
protein CUP-SHAPED COTYLEDON 1
Locus tag
BRADI_1g14467v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100826107 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 1 NC_016131.3 (11398984..11401144, complement)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 1 NC_016131.2 (11398994..11401076, complement)

Chromosome 1 - NC_016131.3Genomic Context describing neighboring genes Neighboring gene exocyst complex component SEC3A Neighboring gene protein JINGUBANG Neighboring gene uncharacterized LOC100834660 Neighboring gene uncharacterized LOC100826416

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein CUP-SHAPED COTYLEDON 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016131.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    11398984..11401144 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003562221.4 → XP_003562269.1  protein CUP-SHAPED COTYLEDON 1

    UniProtKB/TrEMBL
    A0A2K2DJG2, I1GQ88
    Conserved Domains (1) summary
    pfam02365
    Location:8 → 49
    NAM; No apical meristem (NAM) protein
Nucleotide Protein Strain
Heading Accession and Version

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