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LOC100825189 calmodulin-binding transcription activator 4 [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100825189, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100825189
Gene description
calmodulin-binding transcription activator 4
Locus tag
BRADI_2g59137v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100825189 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
12
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 2 NC_016132.3 (56709936..56715693, complement)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 2 NC_016132.2 (56964351..56970094, complement)

Chromosome 2 - NC_016132.3Genomic Context describing neighboring genes Neighboring gene agamous-like MADS-box protein AGL14-like Neighboring gene uncharacterized LOC112270679 Neighboring gene probable histidine kinase 3 Neighboring gene CBS domain-containing protein CBSCBSPB1 Neighboring gene uncharacterized LOC100824068

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calmodulin-binding transcription activator 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016132.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    56709936..56715693 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024460320.1 → XP_024316088.1  calmodulin-binding transcription activator 4 isoform X4

    UniProtKB/TrEMBL
    A0A0Q3KJF6
    Conserved Domains (4) summary
    cd00102
    Location:260 → 346
    IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
    pfam03859
    Location:14 → 128
    CG-1; CG-1 domain
    pfam13637
    Location:467 → 515
    Ank_4; Ankyrin repeats (many copies)
    cl27381
    Location:627 → 785
    Myosin_head; Myosin head (motor domain)

  2. XM_024460319.1 → XP_024316087.1  calmodulin-binding transcription activator 4 isoform X2

    UniProtKB/TrEMBL
    A0A0Q3GJH0
    Conserved Domains (4) summary
    cd00102
    Location:287 → 373
    IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
    pfam03859
    Location:14 → 128
    CG-1; CG-1 domain
    pfam13637
    Location:494 → 542
    Ank_4; Ankyrin repeats (many copies)
    cl27381
    Location:654 → 812
    Myosin_head; Myosin head (motor domain)

  3. XM_010234456.3 → XP_010232758.1  calmodulin-binding transcription activator 4 isoform X3

    UniProtKB/TrEMBL
    A0A0Q3J001
    Conserved Domains (5) summary
    COG0666
    Location:502 → 593
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    cd00102
    Location:276 → 362
    IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
    cd00204
    Location:487 → 531
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam03859
    Location:14 → 128
    CG-1; CG-1 domain
    pfam13637
    Location:483 → 531
    Ank_4; Ankyrin repeats (many copies)

  4. XM_003564908.4 → XP_003564956.1  calmodulin-binding transcription activator 4 isoform X1

    UniProtKB/TrEMBL
    A0A0Q3RDK6
    Conserved Domains (5) summary
    COG0666
    Location:529 → 620
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    cd00102
    Location:303 → 389
    IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
    cd00204
    Location:514 → 558
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam03859
    Location:14 → 128
    CG-1; CG-1 domain
    pfam13637
    Location:510 → 558
    Ank_4; Ankyrin repeats (many copies)
Nucleotide Protein Strain
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