U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC100822174 transcription factor BEE 1 [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100822174, updated on 9-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC100822174
Gene description
transcription factor BEE 1
Locus tag
BRADI_4g34870v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC100822174 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
8
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 4 NC_016134.3 (40280343..40282416, complement)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 4 NC_016134.2 (40462645..40464720, complement)

Chromosome 4 - NC_016134.3Genomic Context describing neighboring genes Neighboring gene cysteine-rich and transmembrane domain-containing protein WIH2 Neighboring gene cilia- and flagella-associated protein 20 Neighboring gene ADP-ribosylation factor GTPase-activating protein AGD3 Neighboring gene uncharacterized LOC100822799

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
transcription factor BEE 1; transcription factor bHLH78

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016134.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    40280343..40282416 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010240044.3 → XP_010238346.2  transcription factor bHLH78 isoform X2

    UniProtKB/TrEMBL
    A0A0Q3IY02, A0A0Q3LEB1
    Conserved Domains (1) summary
    smart00353
    Location:123 → 172
    HLH; helix loop helix domain

  2. XM_010240043.3 → XP_010238345.2  transcription factor BEE 1 isoform X1

    UniProtKB/TrEMBL
    A0A0Q3HBX5, A0A0Q3PNC3
    Conserved Domains (1) summary
    smart00353
    Location:123 → 172
    HLH; helix loop helix domain

  3. XM_010240042.3 → XP_010238344.2  transcription factor BEE 1 isoform X1

    UniProtKB/TrEMBL
    A0A0Q3HBX5, A0A0Q3PNC3
    Conserved Domains (1) summary
    smart00353
    Location:123 → 172
    HLH; helix loop helix domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases