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LOC100819797 putative R1/2-type MYB transcription factor [ Glycine max (soybean) ]

Gene ID: 100819797, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100819797
Gene description
putative R1/2-type MYB transcription factor
Locus tag
GLYMA_18G134200v4
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100819797 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
7
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 18 NC_038254.2 (19206854..19216348, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 18 NC_038254.1 (19253847..19263416, complement)

Chromosome 18 - NC_038254.2Genomic Context describing neighboring genes Neighboring gene cytochrome P450 89A2-like Neighboring gene probable serine/threonine-protein kinase PBL28 Neighboring gene uncharacterized LOC100820328 Neighboring gene gluconokinase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative R1/2-type MYB transcription factor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001253162.2 → NP_001240091.1  putative R1/2-type MYB transcription factor

    See identical proteins and their annotated locations for NP_001240091.1

    Status: VALIDATED

    Source sequence(s)
    ACUP04006293, AI938870, BT096693
    UniProtKB/TrEMBL
    C6TGE3
    Conserved Domains (2) summary
    TIGR01557
    Location:118 → 170
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    cd00167
    Location:12 → 58
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038254.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    19206854..19216348 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026126609.2 → XP_025982394.1  putative R1/2-type MYB transcription factor isoform X1

    UniProtKB/TrEMBL
    C6TGE3
    Conserved Domains (2) summary
    TIGR01557
    Location:118 → 170
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    cd00167
    Location:12 → 58
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  2. XM_014770240.3 → XP_014625726.1  putative R1/2-type MYB transcription factor isoform X1

    UniProtKB/TrEMBL
    C6TGE3
    Conserved Domains (2) summary
    TIGR01557
    Location:118 → 170
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    cd00167
    Location:12 → 58
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  3. XM_026126608.2 → XP_025982393.1  putative R1/2-type MYB transcription factor isoform X1

    UniProtKB/TrEMBL
    C6TGE3
    Conserved Domains (2) summary
    TIGR01557
    Location:118 → 170
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    cd00167
    Location:12 → 58
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  4. XM_041011654.1 → XP_040867588.1  putative R1/2-type MYB transcription factor isoform X1

    UniProtKB/TrEMBL
    C6TGE3
    Conserved Domains (2) summary
    TIGR01557
    Location:118 → 170
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    cd00167
    Location:12 → 58
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  5. XM_014770243.3 → XP_014625729.1  putative R1/2-type MYB transcription factor isoform X1

    UniProtKB/TrEMBL
    C6TGE3
    Conserved Domains (2) summary
    TIGR01557
    Location:118 → 170
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    cd00167
    Location:12 → 58
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  6. XM_041011653.1 → XP_040867587.1  putative R1/2-type MYB transcription factor isoform X1

    UniProtKB/TrEMBL
    C6TGE3
    Conserved Domains (2) summary
    TIGR01557
    Location:118 → 170
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    cd00167
    Location:12 → 58
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  7. XM_041011650.1 → XP_040867584.1  putative R1/2-type MYB transcription factor isoform X1

    UniProtKB/TrEMBL
    C6TGE3
    Conserved Domains (2) summary
    TIGR01557
    Location:118 → 170
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    cd00167
    Location:12 → 58
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  8. XM_041011649.1 → XP_040867583.1  putative R1/2-type MYB transcription factor isoform X1

    UniProtKB/TrEMBL
    C6TGE3
    Conserved Domains (2) summary
    TIGR01557
    Location:118 → 170
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    cd00167
    Location:12 → 58
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  9. XM_014770239.2 → XP_014625725.1  putative R1/2-type MYB transcription factor isoform X1

    UniProtKB/TrEMBL
    C6TGE3
    Conserved Domains (2) summary
    TIGR01557
    Location:118 → 170
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    cd00167
    Location:12 → 58
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  10. XM_041011651.1 → XP_040867585.1  putative R1/2-type MYB transcription factor isoform X1

    UniProtKB/TrEMBL
    C6TGE3
    Conserved Domains (2) summary
    TIGR01557
    Location:118 → 170
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    cd00167
    Location:12 → 58
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  11. XM_014770241.3 → XP_014625727.1  putative R1/2-type MYB transcription factor isoform X1

    UniProtKB/TrEMBL
    C6TGE3
    Conserved Domains (2) summary
    TIGR01557
    Location:118 → 170
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    cd00167
    Location:12 → 58
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
Nucleotide Protein
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