U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC100818543 transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 [ Glycine max (soybean) ]

Gene ID: 100818543, updated on 7-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC100818543
Gene description
transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
Locus tag
GLYMA_10G138800v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC100818543 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
6
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 10 NC_038246.2 (37402231..37404774)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 10 NC_038246.1 (37245398..37247948)

Chromosome 10 - NC_038246.2Genomic Context describing neighboring genes Neighboring gene protoporphyrinogen oxidase 1, chloroplastic Neighboring gene meiosis-specific protein ASY3 Neighboring gene pentatricopeptide repeat-containing protein At1g71460, chloroplastic Neighboring gene transcription factor MYB61

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15; transcription factor PIL1
Names
transcription factor PIL1-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038246.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    37402231..37404774
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006589028.4 → XP_006589091.1  transcription factor PIL1 isoform X1

    UniProtKB/TrEMBL
    K7LJB0
    Conserved Domains (1) summary
    cd11445
    Location:258 → 320
    bHLH_AtPIF_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana phytochrome interacting factors (PIFs) and similar proteins

  2. XM_006589030.4 → XP_006589093.1  transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 isoform X2

    See identical proteins and their annotated locations for XP_006589093.1

    UniProtKB/TrEMBL
    K7LJB1
    Conserved Domains (1) summary
    cd11445
    Location:203 → 265
    bHLH_AtPIF_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana phytochrome interacting factors (PIFs) and similar proteins

  3. XM_041005718.1 → XP_040861652.1  transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 isoform X2

    UniProtKB/TrEMBL
    K7LJB1
    Conserved Domains (1) summary
    cd11445
    Location:203 → 265
    bHLH_AtPIF_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana phytochrome interacting factors (PIFs) and similar proteins

  4. XM_006589029.4 → XP_006589092.1  transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 isoform X2

    See identical proteins and their annotated locations for XP_006589092.1

    UniProtKB/TrEMBL
    K7LJB1
    Conserved Domains (1) summary
    cd11445
    Location:203 → 265
    bHLH_AtPIF_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana phytochrome interacting factors (PIFs) and similar proteins

  5. XM_006589031.4 → XP_006589094.1  transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 isoform X2

    See identical proteins and their annotated locations for XP_006589094.1

    UniProtKB/TrEMBL
    K7LJB1
    Conserved Domains (1) summary
    cd11445
    Location:203 → 265
    bHLH_AtPIF_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana phytochrome interacting factors (PIFs) and similar proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.