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LOC100816103 zinc finger CCCH domain-containing protein 24 [ Glycine max (soybean) ]

Gene ID: 100816103, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100816103
Gene description
zinc finger CCCH domain-containing protein 24
Locus tag
GLYMA_11G147200v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100816103 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
14
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 11 NC_038247.2 (17556872..17562463, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 11 NC_038247.1 (11352004..11357609, complement)

Chromosome 11 - NC_038247.2Genomic Context describing neighboring genes Neighboring gene yrdC domain-containing protein, mitochondrial Neighboring gene uncharacterized LOC100815566 Neighboring gene F-box/FBD/LRR-repeat protein At5g22700-like Neighboring gene uncharacterized LOC102662343

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger CCCH domain-containing protein 24

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038247.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    17556872..17562463 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006591080.4 → XP_006591143.1  zinc finger CCCH domain-containing protein 24

    UniProtKB/TrEMBL
    A0A0R0HHM1, K7LQG4
    Conserved Domains (3) summary
    pfam00642
    Location:66 → 93
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    cl17169
    Location:155 → 210
    RRM_SF; RNA recognition motif (RRM) superfamily
    cl17173
    Location:277 → 883
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
Nucleotide Protein
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