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LOC100816055 transcription factor BIM2-like [ Glycine max (soybean) ]

Gene ID: 100816055, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100816055
Gene description
transcription factor BIM2-like
Locus tag
GLYMA_02G123400v4
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100816055 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
7
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 2 NC_016089.4 (12023913..12029271, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 2 NC_016089.3 (12306443..12311794, complement)

Chromosome 2 - NC_016089.4Genomic Context describing neighboring genes Neighboring gene protease 2 Neighboring gene rhamnogalacturonan I rhamnosyltransferase 1 Neighboring gene geranylgeranyl transferase type-2 subunit alpha 1 Neighboring gene phosphatidylinositol 4-kinase gamma 5 Neighboring gene DNA-3-methyladenine glycosylase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Transcription factor BIM2-like; uncharacterized protein LOC100816055

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001254306.2 → NP_001241235.1  Transcription factor BIM2-like

    See identical proteins and their annotated locations for NP_001241235.1

    Status: PROVISIONAL

    Source sequence(s)
    BT093538
    UniProtKB/TrEMBL
    A0A0R0KW52, C6T7V4
    Conserved Domains (1) summary
    cd11453
    Location:44 → 120
    bHLH_AtBIM_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BES1-interacting Myc-like proteins (BIMs) and similar proteins

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016089.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    12023913..12029271 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006574400.4 → XP_006574463.1  uncharacterized protein LOC100816055 isoform X1

    See identical proteins and their annotated locations for XP_006574463.1

    UniProtKB/TrEMBL
    A0A0R0L6J1, I1JEK7
    Conserved Domains (1) summary
    cd11453
    Location:43 → 119
    bHLH_AtBIM_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BES1-interacting Myc-like proteins (BIMs) and similar proteins
Nucleotide Protein
Heading Accession and Version

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