U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC100814124 transcription factor bHLH48 [ Glycine max (soybean) ]

Gene ID: 100814124, updated on 7-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC100814124
Gene description
transcription factor bHLH48
Locus tag
GLYMA_03G141200v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC100814124 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 3 NC_016090.4 (36907200..36915724, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 3 NC_016090.3 (35721801..35730337, complement)

Chromosome 3 - NC_016090.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100777738 Neighboring gene uncharacterized LOC100778275 Neighboring gene protein cornichon homolog 1 Neighboring gene receptor protein kinase-like protein ZAR1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
transcription factor bHLH48

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016090.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    36907200..36915724 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014773771.3 → XP_014629257.1  transcription factor bHLH48 isoform X1

    UniProtKB/TrEMBL
    I1JNG5, I1JNG7
    Conserved Domains (1) summary
    cd18919
    Location:202 → 287
    bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins

  2. XM_003521145.5 → XP_003521193.1  transcription factor bHLH48 isoform X2

    UniProtKB/TrEMBL
    I1JNG6, I1JNG7
    Conserved Domains (1) summary
    cd18919
    Location:202 → 287
    bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.