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LOC100813413 transcription repressor KAN1 [ Glycine max (soybean) ]

Gene ID: 100813413, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100813413
Gene description
transcription repressor KAN1
Locus tag
GLYMA_11G213700v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100813413 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
6
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 11 NC_038247.2 (35566891..35573625)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 11 NC_038247.1 (30694045..30700744)

Chromosome 11 - NC_038247.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100305850 Neighboring gene cytochrome c oxidase assembly protein COX11, mitochondrial-like Neighboring gene uncharacterized LOC100798498 Neighboring gene uncharacterized LOC106795100

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in abaxial cell fate specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription repressor KAN1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038247.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    35566891..35573625
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006591256.4 → XP_006591319.1  transcription repressor KAN1 isoform X1

    Conserved Domains (1) summary
    TIGR01557
    Location:317 → 370
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class

  2. XM_006591258.4 → XP_006591321.1  transcription repressor KAN1 isoform X3

    Conserved Domains (1) summary
    TIGR01557
    Location:317 → 370
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class

  3. XM_006591257.4 → XP_006591320.1  transcription repressor KAN1 isoform X2

    UniProtKB/TrEMBL
    K7LRG7
    Conserved Domains (1) summary
    TIGR01557
    Location:317 → 370
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class

  4. XM_014764205.3 → XP_014619691.1  transcription repressor KAN1 isoform X4

    UniProtKB/TrEMBL
    K7LRG8
    Conserved Domains (1) summary
    TIGR01557
    Location:317 → 370
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
Nucleotide Protein
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