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LOC100812909 auxin response factor 4 [ Glycine max (soybean) ]

Gene ID: 100812909, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100812909
Gene description
auxin response factor 4
Locus tag
GLYMA_12G171000v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100812909 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
12
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 12 NC_038248.2 (34108270..34114756, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 12 NC_038248.1 (32643525..32650037, complement)

Chromosome 12 - NC_038248.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102668113 Neighboring gene E3 SUMO-protein ligase SIZ1 Neighboring gene long chain base biosynthesis protein 1-like Neighboring gene microRNA MIR5039

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to hormone IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
auxin response factor 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038248.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    34108270..34114756 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041007165.1 → XP_040863099.1  auxin response factor 4 isoform X1

    UniProtKB/TrEMBL
    A0A0R0HGC6
    Conserved Domains (3) summary
    pfam02309
    Location:664 → 743
    AUX_IAA; AUX/IAA family
    pfam02362
    Location:162 → 263
    B3; B3 DNA binding domain
    pfam06507
    Location:288 → 375
    Auxin_resp; Auxin response factor

  2. XM_041007166.1 → XP_040863100.1  auxin response factor 4 isoform X2

    UniProtKB/TrEMBL
    A0A0R0H664
    Conserved Domains (3) summary
    pfam02309
    Location:663 → 742
    AUX_IAA; AUX/IAA family
    pfam02362
    Location:162 → 263
    B3; B3 DNA binding domain
    pfam06507
    Location:288 → 375
    Auxin_resp; Auxin response factor

  3. XM_041007167.1 → XP_040863101.1  auxin response factor 4 isoform X5

    UniProtKB/TrEMBL
    A0A0R0HJ21
    Conserved Domains (3) summary
    pfam02309
    Location:664 → 748
    AUX_IAA; AUX/IAA family
    pfam02362
    Location:162 → 263
    B3; B3 DNA binding domain
    pfam06507
    Location:288 → 375
    Auxin_resp; Auxin response factor

  4. XM_041007168.1 → XP_040863102.1  auxin response factor 4 isoform X6

    UniProtKB/TrEMBL
    A0A0R0H6C7
    Conserved Domains (1) summary
    smart01019
    Location:162 → 263
    B3; B3 DNA binding domain

  5. XM_006592616.4 → XP_006592679.1  auxin response factor 4 isoform X3

    See identical proteins and their annotated locations for XP_006592679.1

    UniProtKB/TrEMBL
    A0A0R0HGC6, I1LTG4
    Conserved Domains (3) summary
    pfam02309
    Location:668 → 738
    AUX_IAA; AUX/IAA family
    pfam02362
    Location:162 → 263
    B3; B3 DNA binding domain
    pfam06507
    Location:288 → 370
    Auxin_resp; Auxin response factor

  6. XM_006592619.4 → XP_006592682.1  auxin response factor 4 isoform X8

    UniProtKB/TrEMBL
    A0A0R0H6C7, I1LTG6
    Conserved Domains (3) summary
    pfam02309
    Location:667 → 742
    AUX_IAA; AUX/IAA family
    pfam02362
    Location:162 → 263
    B3; B3 DNA binding domain
    pfam06507
    Location:288 → 370
    Auxin_resp; Auxin response factor

  7. XM_006592617.4 → XP_006592680.1  auxin response factor 4 isoform X4

    UniProtKB/TrEMBL
    A0A0R0H664, K7LVF6
    Conserved Domains (3) summary
    pfam02309
    Location:658 → 737
    AUX_IAA; AUX/IAA family
    pfam02362
    Location:162 → 263
    B3; B3 DNA binding domain
    pfam06507
    Location:288 → 370
    Auxin_resp; Auxin response factor

  8. XM_003540118.5 → XP_003540166.1  auxin response factor 4 isoform X7

    UniProtKB/TrEMBL
    A0A0R0HJ21, K7LVF7
    Conserved Domains (3) summary
    pfam02309
    Location:659 → 743
    AUX_IAA; AUX/IAA family
    pfam02362
    Location:162 → 263
    B3; B3 DNA binding domain
    pfam06507
    Location:288 → 370
    Auxin_resp; Auxin response factor
Nucleotide Protein
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