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LOC100812275 AP2-like ethylene-responsive transcription factor ANT [ Glycine max (soybean) ]

Gene ID: 100812275, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100812275
Gene description
AP2-like ethylene-responsive transcription factor ANT
Locus tag
GLYMA_01G195900v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100812275 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 1 NC_016088.4 (54102910..54106577)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 1 NC_016088.3 (52990302..52993961)

Chromosome 1 - NC_016088.4Genomic Context describing neighboring genes Neighboring gene basic leucine zipper 4 Neighboring gene small nucleolar RNA snoR126 Neighboring gene putative leucine-rich repeat receptor-like protein kinase Neighboring gene 1-aminocyclopropane-1-carboxylate synthase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AP2-like ethylene-responsive transcription factor ANT

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016088.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    54102910..54106577
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014776365.3 → XP_014631851.1  AP2-like ethylene-responsive transcription factor ANT isoform X1

    UniProtKB/TrEMBL
    K7K4R6
    Conserved Domains (1) summary
    smart00380
    Location:378 → 449
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs

  2. XM_006573611.4 → XP_006573674.1  AP2-like ethylene-responsive transcription factor ANT isoform X2

    UniProtKB/TrEMBL
    K7K4R6
    Conserved Domains (1) summary
    smart00380
    Location:378 → 442
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs

  3. XM_006573612.4 → XP_006573675.1  AP2-like ethylene-responsive transcription factor ANT isoform X3

    UniProtKB/TrEMBL
    K7K4R6, K7K4R7
    Conserved Domains (1) summary
    smart00380
    Location:378 → 441
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
Nucleotide Protein
Heading Accession and Version

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