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LOC100812161 B3 domain-containing transcription factor NGA1 [ Glycine max (soybean) ]

Gene ID: 100812161, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100812161
Gene description
B3 domain-containing transcription factor NGA1
Locus tag
GLYMA_19G261300v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100812161 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
7
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 19 NC_038255.2 (50982999..50988704)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 19 NC_038255.1 (50457297..50462767)

Chromosome 19 - NC_038255.2Genomic Context describing neighboring genes Neighboring gene endoribonuclease Dicer homolog 1 Neighboring gene uncharacterized LOC121174148 Neighboring gene uncharacterized LOC106797220 Neighboring gene probable inactive purple acid phosphatase 29

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
B3 domain-containing transcription factor NGA1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038255.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    50982999..50988704
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003553758.5 → XP_003553806.1  B3 domain-containing transcription factor NGA1

    See identical proteins and their annotated locations for XP_003553806.1

    UniProtKB/TrEMBL
    I1NCS4
    Conserved Domains (1) summary
    pfam02362
    Location:90 → 177
    B3; B3 DNA binding domain

  2. XM_006604863.4 → XP_006604926.1  B3 domain-containing transcription factor NGA1

    See identical proteins and their annotated locations for XP_006604926.1

    UniProtKB/TrEMBL
    I1NCS4
    Conserved Domains (1) summary
    pfam02362
    Location:90 → 177
    B3; B3 DNA binding domain

  3. XM_041012782.1 → XP_040868716.1  B3 domain-containing transcription factor NGA1

    UniProtKB/TrEMBL
    I1NCS4
    Conserved Domains (1) summary
    pfam02362
    Location:90 → 177
    B3; B3 DNA binding domain

  4. XM_014772152.2 → XP_014627638.1  B3 domain-containing transcription factor NGA1

    UniProtKB/TrEMBL
    I1NCS4
    Conserved Domains (1) summary
    pfam02362
    Location:90 → 177
    B3; B3 DNA binding domain

RNA

  1. XR_420074.3 RNA Sequence

  2. XR_420075.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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