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PIF4B transcription factor PIF4 [ Glycine max (soybean) ]

Gene ID: 100811345, updated on 7-Dec-2023

Summary

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Gene symbol
PIF4B
Gene description
transcription factor PIF4
Locus tag
GLYMA_14G032200v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
Also known as
GmPIF4b
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Genomic context

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See PIF4B in Genome Data Viewer
Location:
chromosome: 14
Exon count:
9
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 14 NC_038250.2 (2334464..2339890)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 14 NC_038250.1 (2338763..2344253)

Chromosome 14 - NC_038250.2Genomic Context describing neighboring genes Neighboring gene reticulon-like protein B8-like Neighboring gene putative membrane fusion protein Use1 Neighboring gene polyamine oxidase 2 Neighboring gene protein DETOXIFICATION 41

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomic and molecular analysis of conserved and unique features of soybean PIF4. Arya H, et al. Sci Rep, 2018 Aug 22. PMID 30135599, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor PIF4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038250.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    2334464..2339890
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006595699.4 → XP_006595762.1  transcription factor PIF4

    See identical proteins and their annotated locations for XP_006595762.1

    UniProtKB/TrEMBL
    I1M718
    Conserved Domains (1) summary
    cd11445
    Location:360 → 423
    bHLH_AtPIF_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana phytochrome interacting factors (PIFs) and similar proteins

  2. XM_041009206.1 → XP_040865140.1  transcription factor PIF4

    UniProtKB/TrEMBL
    I1M718
    Conserved Domains (1) summary
    cd11445
    Location:360 → 423
    bHLH_AtPIF_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana phytochrome interacting factors (PIFs) and similar proteins
Nucleotide Protein
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