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LOC100810093 class 2 transcription repressor NC2 alpha 3 [ Glycine max (soybean) ]

Gene ID: 100810093, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100810093
Gene description
class 2 transcription repressor NC2 alpha 3
Locus tag
GLYMA_06G311400v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100810093 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
6
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 6 NC_038242.2 (49524311..49529012, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 6 NC_038242.1 (49984996..49989565, complement)

Chromosome 6 - NC_038242.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113001904 Neighboring gene uncharacterized LOC100800476 Neighboring gene disease resistance protein RPM1 Neighboring gene zinc finger protein 3 Neighboring gene pentatricopeptide repeat-containing protein At1g11290, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide expression analysis of soybean NF-Y genes reveals potential function in development and drought response. Quach TN, et al. Mol Genet Genomics, 2015 Jun. PMID 25542200, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dr1-associated corepressor homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038242.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    49524311..49529012 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003527476.5 → XP_003527524.1  dr1-associated corepressor homolog

    See identical proteins and their annotated locations for XP_003527524.1

    UniProtKB/TrEMBL
    I1KFK3
    Conserved Domains (1) summary
    COG5247
    Location:3 → 89
    BUR6; Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription]
Nucleotide Protein
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