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LOC100809369 uncharacterized LOC100809369 [ Glycine max (soybean) ]

Gene ID: 100809369, updated on 10-Oct-2024

Summary

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Gene symbol
LOC100809369
Gene description
uncharacterized LOC100809369
Locus tag
GLYMA_06G026100v4
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100809369 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 6 NC_038242.2 (1996723..2000963, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 6 NC_038242.1 (2007110..2011271, complement)

Chromosome 6 - NC_038242.2Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA snoR20a Neighboring gene small nucleolar RNA R38 Neighboring gene aldehyde oxidase GLOX1 Neighboring gene aldehyde oxidase GLOX

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale sequencing of normalized full-length cDNA library of soybean seed at different developmental stages and analysis of the gene expression profiles based on ESTs. Sha AH, et al. Mol Biol Rep, 2012 Mar. PMID 21667246
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in response to ethylene IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Protein BASIC PENTACYSTEINE6-like; uncharacterized protein LOC100809369

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001255568.2 → NP_001242497.2  Protein BASIC PENTACYSTEINE6-like

    Status: VALIDATED

    Source sequence(s)
    BT093610, EV266355, FK353229, FK585429, HO042593
    UniProtKB/TrEMBL
    I1K7L4

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038242.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    1996723..2000963 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006580976.4 → XP_006581039.1  uncharacterized protein LOC100809369 isoform X1

    UniProtKB/TrEMBL
    I1K7L4
    Conserved Domains (1) summary
    pfam06217
    Location:1 → 337
    GAGA_bind; GAGA binding protein-like family

  2. XM_006580973.4 → XP_006581036.1  uncharacterized protein LOC100809369 isoform X1

    See identical proteins and their annotated locations for XP_006581036.1

    UniProtKB/TrEMBL
    C6T818, I1K7L4
    Conserved Domains (1) summary
    pfam06217
    Location:1 → 337
    GAGA_bind; GAGA binding protein-like family

  3. XM_006580977.4 → XP_006581040.1  uncharacterized protein LOC100809369 isoform X1

    See identical proteins and their annotated locations for XP_006581040.1

    UniProtKB/TrEMBL
    C6T818, I1K7L4
    Conserved Domains (1) summary
    pfam06217
    Location:1 → 337
    GAGA_bind; GAGA binding protein-like family

  4. XM_006580979.4 → XP_006581042.1  uncharacterized protein LOC100809369 isoform X1

    See identical proteins and their annotated locations for XP_006581042.1

    UniProtKB/TrEMBL
    C6T818, I1K7L4
    Conserved Domains (1) summary
    pfam06217
    Location:1 → 337
    GAGA_bind; GAGA binding protein-like family

  5. XM_006580974.4 → XP_006581037.1  uncharacterized protein LOC100809369 isoform X1

    See identical proteins and their annotated locations for XP_006581037.1

    UniProtKB/TrEMBL
    C6T818, I1K7L4
    Conserved Domains (1) summary
    pfam06217
    Location:1 → 337
    GAGA_bind; GAGA binding protein-like family

  6. XM_041016018.1 → XP_040871952.1  uncharacterized protein LOC100809369 isoform X1

    UniProtKB/TrEMBL
    C6T818, I1K7L4
    Conserved Domains (1) summary
    pfam06217
    Location:1 → 337
    GAGA_bind; GAGA binding protein-like family

  7. XM_026128702.2 → XP_025984487.1  uncharacterized protein LOC100809369 isoform X1

    UniProtKB/TrEMBL
    C6T818, I1K7L4
    Conserved Domains (1) summary
    pfam06217
    Location:1 → 337
    GAGA_bind; GAGA binding protein-like family

  8. XM_041016017.1 → XP_040871951.1  uncharacterized protein LOC100809369 isoform X1

    UniProtKB/TrEMBL
    C6T818, I1K7L4
    Conserved Domains (1) summary
    pfam06217
    Location:1 → 337
    GAGA_bind; GAGA binding protein-like family
Nucleotide Protein
Heading Accession and Version

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