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LOC100808803 transcription factor ILR3 [ Glycine max (soybean) ]

Gene ID: 100808803, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100808803
Gene description
transcription factor ILR3
Locus tag
GLYMA_13G251300v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100808803 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
3
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 13 NC_038249.2 (35249843..35251019)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 13 NC_038249.1 (35845164..35846364)

Chromosome 13 - NC_038249.2Genomic Context describing neighboring genes Neighboring gene kinesin-like protein KIN-14C Neighboring gene uncharacterized LOC100306280 Neighboring gene sulfite exporter TauE/SafE family protein 5 Neighboring gene cysteine-rich repeat secretory protein 38

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular iron ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor ILR3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038249.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    35249843..35251019
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006594589.4 → XP_006594652.1  transcription factor ILR3

    UniProtKB/TrEMBL
    I1M2H3
    Conserved Domains (2) summary
    smart00353
    Location:2 → 47
    HLH; helix loop helix domain
    pfam06005
    Location:38 → 90
    DUF904; Protein of unknown function (DUF904)
Nucleotide Protein
Heading Accession and Version

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