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LOC100808212 APETALA2-like protein 3 [ Glycine max (soybean) ]

Gene ID: 100808212, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100808212
Gene description
APETALA2-like protein 3
Locus tag
GLYMA_03G177500v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100808212 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 3 NC_016090.4 (40187829..40190793)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 3 NC_016090.3 (39015650..39018729)

Chromosome 3 - NC_016090.4Genomic Context describing neighboring genes Neighboring gene protein REVEILLE 8 Neighboring gene 60S ribosomal protein L4 Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At1g67720 Neighboring gene nuclear transcription factor Y subunit B-10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
APETALA2-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016090.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    40187829..40190793
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003520593.5 → XP_003520641.1  APETALA2-like protein 3

    UniProtKB/TrEMBL
    I1JPI9, I1NA54
    Conserved Domains (1) summary
    smart00380
    Location:217 → 280
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases