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LOC100808119 auxin response factor 3 [ Glycine max (soybean) ]

Gene ID: 100808119, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100808119
Gene description
auxin response factor 3
Locus tag
GLYMA_13G174000v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100808119 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
11
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 13 NC_038249.2 (28226412..28232396)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 13 NC_038249.1 (28805473..28811480)

Chromosome 13 - NC_038249.2Genomic Context describing neighboring genes Neighboring gene isoflavone 4'-O-methyltransferase Neighboring gene UDP-glycosyltransferase 74G1 Neighboring gene glutaredoxin-C9 Neighboring gene guanylate-binding protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to hormone IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
auxin response factor 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038249.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    28226412..28232396
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006594237.4 → XP_006594300.1  auxin response factor 3 isoform X3

    UniProtKB/TrEMBL
    A0A0R0GQJ8
    Conserved Domains (2) summary
    pfam02362
    Location:136 → 237
    B3; B3 DNA binding domain
    pfam06507
    Location:262 → 343
    Auxin_resp; Auxin response factor

  2. XM_003542668.5 → XP_003542716.1  auxin response factor 3 isoform X1

    UniProtKB/TrEMBL
    A0A0R0GQJ8, I1M054
    Conserved Domains (2) summary
    pfam02362
    Location:140 → 241
    B3; B3 DNA binding domain
    pfam06507
    Location:266 → 347
    Auxin_resp; Auxin response factor

  3. XM_006594236.4 → XP_006594299.1  auxin response factor 3 isoform X2

    UniProtKB/TrEMBL
    A0A0R0GQJ8, K7M0A7
    Conserved Domains (2) summary
    pfam02362
    Location:137 → 238
    B3; B3 DNA binding domain
    pfam06507
    Location:263 → 344
    Auxin_resp; Auxin response factor
Nucleotide Protein
Heading Accession and Version

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