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LOC100806138 zinc finger protein SHOOT GRAVITROPISM 5 [ Glycine max (soybean) ]

Gene ID: 100806138, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100806138
Gene description
zinc finger protein SHOOT GRAVITROPISM 5
Locus tag
GLYMA_05G137000v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100806138 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 5 NC_038241.2 (33005770..33009017, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 5 NC_038241.1 (32964747..32968131, complement)

Chromosome 5 - NC_038241.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102659756 Neighboring gene brassinosteroid receptor-like protein Neighboring gene uncharacterized LOC100814354 Neighboring gene putative clathrin assembly protein At1g25240

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in gravitropism IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein SHOOT GRAVITROPISM 5
Names
protein SHOOT GRAVITROPISM 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038241.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    33005770..33009017 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014775654.3 → XP_014631140.1  zinc finger protein SHOOT GRAVITROPISM 5 isoform X2

    UniProtKB/TrEMBL
    A0A0R0K1X5
    Conserved Domains (1) summary
    cd06503
    Location:297 → 362
    ATP-synt_Fo_b; F-type ATP synthase, membrane subunit b

  2. XM_006580023.4 → XP_006580086.1  zinc finger protein SHOOT GRAVITROPISM 5 isoform X1

    UniProtKB/TrEMBL
    A0A0R0IQA7, K7KQ35
    Conserved Domains (2) summary
    sd00017
    Location:142 → 161
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd06503
    Location:326 → 391
    ATP-synt_Fo_b; F-type ATP synthase, membrane subunit b
Nucleotide Protein
Heading Accession and Version

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