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LOC100805260 agamous-like MADS-box protein AGL19-like [ Glycine max (soybean) ]

Gene ID: 100805260, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100805260
Gene description
agamous-like MADS-box protein AGL19-like
Locus tag
GLYMA_05G050700v4
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100805260 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 5 NC_038241.2 (4656708..4664184)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 5 NC_038241.1 (4535781..4543282)

Chromosome 5 - NC_038241.2Genomic Context describing neighboring genes Neighboring gene bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase Neighboring gene homeobox protein HD1 Neighboring gene uncharacterized LOC100798356 Neighboring gene leucine-rich repeat receptor protein kinase HPCA1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
agamous-like MADS-box protein AGL19-like; uncharacterized protein LOC100805260

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001254050.2 → NP_001240979.1  agamous-like MADS-box protein AGL19-like

    See identical proteins and their annotated locations for NP_001240979.1

    Status: PROVISIONAL

    Source sequence(s)
    BT099218
    UniProtKB/TrEMBL
    C6TNA0, I1K0E9
    Conserved Domains (2) summary
    cd00265
    Location:3 → 70
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:88 → 171
    K-box; K-box region

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038241.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    4656708..4664184
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006579376.4 → XP_006579439.1  uncharacterized protein LOC100805260 isoform X2

    See identical proteins and their annotated locations for XP_006579439.1

    UniProtKB/TrEMBL
    C6TNA0, I1K0E9
    Conserved Domains (2) summary
    cd00265
    Location:3 → 70
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:88 → 171
    K-box; K-box region

  2. XM_041015230.1 → XP_040871164.1  uncharacterized protein LOC100805260 isoform X3

  3. XM_006579374.4 → XP_006579437.1  uncharacterized protein LOC100805260 isoform X1

    See identical proteins and their annotated locations for XP_006579437.1

    UniProtKB/TrEMBL
    I1K0E6, I1K0E9
    Conserved Domains (2) summary
    cd00265
    Location:3 → 73
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:91 → 174
    K-box; K-box region

  4. XM_006579375.4 → XP_006579438.1  uncharacterized protein LOC100805260 isoform X1

    See identical proteins and their annotated locations for XP_006579438.1

    UniProtKB/TrEMBL
    I1K0E6, I1K0E9
    Conserved Domains (2) summary
    cd00265
    Location:3 → 73
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:91 → 174
    K-box; K-box region
Nucleotide Protein
Heading Accession and Version

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