U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC100804089 probable WRKY transcription factor 15 [ Glycine max (soybean) ]

Gene ID: 100804089, updated on 7-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC100804089
Gene description
probable WRKY transcription factor 15
Locus tag
GLYMA_01G189100v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
Also known as
WRKY15c; SoyWRKY15c
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC100804089 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 1 NC_016088.4 (53533188..53535138, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 1 NC_016088.3 (52420243..52422215, complement)

Chromosome 1 - NC_016088.4Genomic Context describing neighboring genes Neighboring gene SUMO-conjugating enzyme SCE1 Neighboring gene protein IRREGULAR XYLEM 15 Neighboring gene beta-1,4-xylosyltransferase IRX14 Neighboring gene UPF0481 protein At3g47200-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Differential expression of a WRKY gene between wild and cultivated soybeans correlates to seed size. Gu Y, et al. J Exp Bot, 2017 May 17. PMID 28472462, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable WRKY transcription factor 15

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016088.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    53533188..53535138 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006573584.4 → XP_006573647.1  probable WRKY transcription factor 15 isoform X2

    UniProtKB/TrEMBL
    A0A0B4SXC9, I1J998
    Conserved Domains (2) summary
    smart00774
    Location:248 → 305
    WRKY; DNA binding domain
    pfam10533
    Location:204 → 245
    Plant_zn_clust; Plant zinc cluster domain

  2. XM_003517268.5 → XP_003517316.1  probable WRKY transcription factor 15 isoform X1

    See identical proteins and their annotated locations for XP_003517316.1

    UniProtKB/TrEMBL
    A0A0B4SXC9, A0A0R0LIG2
    Conserved Domains (2) summary
    smart00774
    Location:249 → 306
    WRKY; DNA binding domain
    pfam10533
    Location:204 → 246
    Plant_zn_clust; Plant zinc cluster domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.