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LOC100803302 auxin response factor 19 [ Glycine max (soybean) ]

Gene ID: 100803302, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100803302
Gene description
auxin response factor 19
Locus tag
GLYMA_05G221300v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100803302 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
14
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 5 NC_038241.2 (40123104..40129887, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 5 NC_038241.1 (40073946..40080831, complement)

Chromosome 5 - NC_038241.2Genomic Context describing neighboring genes Neighboring gene biotin carboxylase precursor Neighboring gene DExH-box ATP-dependent RNA helicase DExH10-like Neighboring gene microRNA MIR10420 Neighboring gene mitochondrial import receptor subunit TOM7-1 Neighboring gene homeobox-DDT domain protein RLT3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to hormone IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
auxin response factor 19

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038241.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    40123104..40129887 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006580431.4 → XP_006580494.1  auxin response factor 19 isoform X3

    UniProtKB/TrEMBL
    A0A0R0JZS8, A0A0R0K7D4
    Conserved Domains (3) summary
    pfam02309
    Location:990 → 1058
    AUX_IAA; AUX/IAA family
    pfam02362
    Location:132 → 234
    B3; B3 DNA binding domain
    pfam06507
    Location:264 → 341
    Auxin_resp; Auxin response factor

  2. XM_041015671.1 → XP_040871605.1  auxin response factor 19 isoform X2

    UniProtKB/TrEMBL
    A0A0R0JZS8
    Conserved Domains (3) summary
    pfam02309
    Location:987 → 1065
    AUX_IAA; AUX/IAA family
    pfam02362
    Location:130 → 232
    B3; B3 DNA binding domain
    pfam06507
    Location:262 → 339
    Auxin_resp; Auxin response factor

  3. XM_003524377.5 → XP_003524425.1  auxin response factor 19 isoform X1

    UniProtKB/TrEMBL
    A0A0R0JZS8, I1K651
    Conserved Domains (3) summary
    pfam02309
    Location:989 → 1067
    AUX_IAA; AUX/IAA family
    pfam02362
    Location:132 → 234
    B3; B3 DNA binding domain
    pfam06507
    Location:264 → 341
    Auxin_resp; Auxin response factor

  4. XM_006580433.3 → XP_006580496.1  auxin response factor 19 isoform X4

    UniProtKB/TrEMBL
    A0A0R0JZS8
    Conserved Domains (2) summary
    pfam02309
    Location:774 → 852
    AUX_IAA; AUX/IAA family
    pfam06507
    Location:49 → 126
    Auxin_resp; Auxin response factor
Nucleotide Protein
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