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LOC100802242 ethylene-responsive transcription factor ERF110 [ Glycine max (soybean) ]

Gene ID: 100802242, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100802242
Gene description
ethylene-responsive transcription factor ERF110
Locus tag
GLYMA_20G168500v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100802242 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
3
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 20 NC_038256.2 (40605184..40607075)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 20 NC_038256.1 (40632975..40635279)

Chromosome 20 - NC_038256.2Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L3 Neighboring gene polypyrimidine tract-binding protein homolog 3-like Neighboring gene uncharacterized LOC106797758 Neighboring gene uncharacterized LOC100802772

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ethylene-activated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ethylene-responsive transcription factor ERF110

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038256.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    40605184..40607075
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006606105.3 → XP_006606168.1  ethylene-responsive transcription factor ERF110

    See identical proteins and their annotated locations for XP_006606168.1

    UniProtKB/TrEMBL
    A0A0R4J677
    Conserved Domains (1) summary
    smart00380
    Location:72 → 123
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs

  2. XM_026127292.2 → XP_025983077.1  ethylene-responsive transcription factor ERF110

    UniProtKB/TrEMBL
    A0A0R4J677
    Conserved Domains (1) summary
    smart00380
    Location:72 → 123
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs

  3. XM_006606108.4 → XP_006606171.1  ethylene-responsive transcription factor ERF110

    See identical proteins and their annotated locations for XP_006606171.1

    UniProtKB/TrEMBL
    A0A0R4J677
    Conserved Domains (1) summary
    smart00380
    Location:72 → 123
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs

  4. XM_041013356.1 → XP_040869290.1  ethylene-responsive transcription factor ERF110

    UniProtKB/TrEMBL
    A0A0R4J677
    Conserved Domains (1) summary
    smart00380
    Location:72 → 123
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs

  5. XM_006606109.3 → XP_006606172.1  ethylene-responsive transcription factor ERF110

    See identical proteins and their annotated locations for XP_006606172.1

    UniProtKB/TrEMBL
    A0A0R4J677
    Conserved Domains (1) summary
    smart00380
    Location:72 → 123
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs

  6. XM_006606106.4 → XP_006606169.1  ethylene-responsive transcription factor ERF110

    See identical proteins and their annotated locations for XP_006606169.1

    UniProtKB/TrEMBL
    A0A0R4J677
    Conserved Domains (1) summary
    smart00380
    Location:72 → 123
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
Nucleotide Protein
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