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LOC100801975 floral homeotic protein APETALA 2 [ Glycine max (soybean) ]

Gene ID: 100801975, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100801975
Gene description
floral homeotic protein APETALA 2
Locus tag
GLYMA_01G188400v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100801975 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 1 NC_016088.4 (53456753..53460592, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 1 NC_016088.3 (52343826..52347500, complement)

Chromosome 1 - NC_016088.4Genomic Context describing neighboring genes Neighboring gene protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic Neighboring gene filament-like plant protein 7 Neighboring gene CBS domain-containing protein CBSX1, chloroplastic Neighboring gene DNA-binding domain-containing protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
floral homeotic protein APETALA 2
Names
integrase-type DNA-binding superfamily protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016088.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    53456753..53460592 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003517264.5 → XP_003517312.1  floral homeotic protein APETALA 2 isoform X2

    UniProtKB/TrEMBL
    A0A0R0HKT1, I1J989
    Conserved Domains (2) summary
    smart00380
    Location:242 → 305
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
    cl00033
    Location:150 → 212
    AP2; DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor ...

  2. XM_006573579.4 → XP_006573642.1  floral homeotic protein APETALA 2 isoform X1

    UniProtKB/TrEMBL
    A0A0R0HKT1, K7K4M6
    Conserved Domains (2) summary
    smart00380
    Location:242 → 305
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
    cl00033
    Location:150 → 212
    AP2; DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor ...

  3. XM_006573580.4 → XP_006573643.1  floral homeotic protein APETALA 2 isoform X3

    UniProtKB/TrEMBL
    A0A0R0HKT1, I1J990
    Conserved Domains (2) summary
    smart00380
    Location:242 → 305
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
    cl00033
    Location:150 → 212
    AP2; DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor ...

  4. XM_041016561.1 → XP_040872495.1  floral homeotic protein APETALA 2 isoform X4

    UniProtKB/TrEMBL
    A0A0R0HKT1, K7K4M7
    Conserved Domains (2) summary
    smart00380
    Location:242 → 305
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
    cl00033
    Location:150 → 212
    AP2; DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor ...
Nucleotide Protein
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