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LOC100801182 zinc finger protein JACKDAW [ Glycine max (soybean) ]

Gene ID: 100801182, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100801182
Gene description
zinc finger protein JACKDAW
Locus tag
GLYMA_13G139000v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100801182 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
3
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 13 NC_038249.2 (24246630..24249727)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 13 NC_038249.1 (25156946..25160084)

Chromosome 13 - NC_038249.2Genomic Context describing neighboring genes Neighboring gene probable E3 ubiquitin-protein ligase RHG1A Neighboring gene syntaxin-71 Neighboring gene probable catabolite repression protein creC Neighboring gene E3 ubiquitin-protein ligase MARCHF7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein JACKDAW

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038249.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    24246630..24249727
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003541359.5 → XP_003541407.1  zinc finger protein JACKDAW

    UniProtKB/TrEMBL
    K7LZN2
    Conserved Domains (1) summary
    sd00017
    Location:67 → 87
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
Heading Accession and Version

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