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LOC100801107 AP2/ERF and B3 domain-containing transcription repressor TEM1 [ Glycine max (soybean) ]

Gene ID: 100801107, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100801107
Gene description
AP2/ERF and B3 domain-containing transcription repressor TEM1
Locus tag
GLYMA_02G099500v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100801107 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
1
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 2 NC_016089.4 (9263914..9265862, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 2 NC_016089.3 (9306968..9308717, complement)

Chromosome 2 - NC_016089.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102661506 Neighboring gene probable glutathione S-transferase Neighboring gene uncharacterized LOC102662360 Neighboring gene receptor-like protein 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AP2/ERF and B3 domain-containing transcription repressor TEM1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016089.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    9263914..9265862 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003518634.5 → XP_003518682.1  AP2/ERF and B3 domain-containing transcription repressor TEM1

    See identical proteins and their annotated locations for XP_003518682.1

    UniProtKB/TrEMBL
    I1JDW7
    Conserved Domains (2) summary
    smart00380
    Location:82 → 139
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
    pfam02362
    Location:210 → 324
    B3; B3 DNA binding domain
Nucleotide Protein
Heading Accession and Version

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