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LOC100799872 transcription factor bHLH30 [ Glycine max (soybean) ]

Gene ID: 100799872, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100799872
Gene description
transcription factor bHLH30
Locus tag
GLYMA_10G205000v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
Also known as
BHLH
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Genomic context

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See LOC100799872 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
3
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 10 NC_038246.2 (43712126..43715623, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 10 NC_038246.1 (43638555..43641877, complement)

Chromosome 10 - NC_038246.2Genomic Context describing neighboring genes Neighboring gene leucoanthocyanidin reductase Neighboring gene uncharacterized LOC100794581 Neighboring gene uncharacterized LOC100800405 Neighboring gene piriformospora indica-insensitive protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH30

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038246.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    43712126..43715623 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006589322.4 → XP_006589385.1  transcription factor bHLH30

    See identical proteins and their annotated locations for XP_006589385.1

    UniProtKB/TrEMBL
    H2EUM8
    Conserved Domains (2) summary
    cd04873
    Location:245 → 291
    ACT_UUR-ACR-like; ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD
    cd11455
    Location:154 → 230
    bHLH_AtAIG1_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana protein AIG1 and similar proteins

  2. XM_003536271.5 → XP_003536319.1  transcription factor bHLH30

    See identical proteins and their annotated locations for XP_003536319.1

    UniProtKB/TrEMBL
    H2EUM8
    Conserved Domains (2) summary
    cd04873
    Location:245 → 291
    ACT_UUR-ACR-like; ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD
    cd11455
    Location:154 → 230
    bHLH_AtAIG1_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana protein AIG1 and similar proteins

  3. XM_041005851.1 → XP_040861785.1  transcription factor bHLH30

    UniProtKB/TrEMBL
    H2EUM8
    Conserved Domains (2) summary
    cd04873
    Location:245 → 291
    ACT_UUR-ACR-like; ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD
    cd11455
    Location:154 → 230
    bHLH_AtAIG1_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana protein AIG1 and similar proteins

  4. XM_041005850.1 → XP_040861784.1  transcription factor bHLH30

    UniProtKB/TrEMBL
    H2EUM8
    Conserved Domains (2) summary
    cd04873
    Location:245 → 291
    ACT_UUR-ACR-like; ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD
    cd11455
    Location:154 → 230
    bHLH_AtAIG1_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana protein AIG1 and similar proteins
Nucleotide Protein
Heading Accession and Version

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