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LOC100798875 calmodulin-binding transcription activator 1 [ Glycine max (soybean) ]

Gene ID: 100798875, updated on 7-Dec-2023

Summary

Gene symbol
LOC100798875
Gene description
calmodulin-binding transcription activator 1
Locus tag
GLYMA_05G178200v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

See LOC100798875 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
13
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 5 NC_038241.2 (36651595..36659464, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 5 NC_038241.1 (36640106..36648020, complement)

Chromosome 5 - NC_038241.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100305741 Neighboring gene ubiquitin carboxyl-terminal hydrolase 4 Neighboring gene ras-related protein RABH1e Neighboring gene syntaxin-112

Genomic regions, transcripts, and products

General gene information

Markers

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
calmodulin-binding transcription activator 1; calmodulin-binding transcription activator 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038241.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    36651595..36659464 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006580210.4XP_006580273.1  calmodulin-binding transcription activator 3 isoform X1

    UniProtKB/TrEMBL
    A0A0R0K3U9, K7KQY0
    Conserved Domains (3) summary
    sd00045
    Location:741772
    ANK; ANK repeat [structural motif]
    pfam03859
    Location:23135
    CG-1; CG-1 domain
    pfam12796
    Location:746836
    Ank_2; Ankyrin repeats (3 copies)
  2. XM_003524214.5XP_003524262.1  calmodulin-binding transcription activator 1 isoform X2

    UniProtKB/TrEMBL
    A0A0R0K3U9, I1K4J1
    Conserved Domains (3) summary
    sd00045
    Location:726757
    ANK; ANK repeat [structural motif]
    pfam03859
    Location:23135
    CG-1; CG-1 domain
    pfam12796
    Location:731821
    Ank_2; Ankyrin repeats (3 copies)