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LOC100797720 transcription factor bHLH49 [ Glycine max (soybean) ]

Gene ID: 100797720, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100797720
Gene description
transcription factor bHLH49
Locus tag
GLYMA_01G068600v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100797720 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 1 NC_016088.4 (11484989..11489876, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 1 NC_016088.3 (11500995..11505956, complement)

Chromosome 1 - NC_016088.4Genomic Context describing neighboring genes Neighboring gene protein MAIN-LIKE 1-like Neighboring gene uncharacterized LOC106799490 Neighboring gene WPP domain-interacting tail-anchored protein 2 Neighboring gene small nucleolar RNA R160

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH49

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016088.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    11484989..11489876 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006573121.4 → XP_006573184.1  transcription factor bHLH49 isoform X1

    See identical proteins and their annotated locations for XP_006573184.1

    UniProtKB/TrEMBL
    K7K2A6
    Conserved Domains (1) summary
    cd18919
    Location:353 → 438
    bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins

  2. XM_041017762.1 → XP_040873696.1  transcription factor bHLH49 isoform X1

    UniProtKB/TrEMBL
    K7K2A6
    Conserved Domains (1) summary
    cd18919
    Location:353 → 438
    bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins

  3. XM_003516620.5 → XP_003516668.2  transcription factor bHLH49 isoform X1

    See identical proteins and their annotated locations for XP_003516668.2

    UniProtKB/TrEMBL
    K7K2A6
    Conserved Domains (1) summary
    cd18919
    Location:353 → 438
    bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins

  4. XM_014773835.3 → XP_014629321.1  transcription factor bHLH49 isoform X1

    UniProtKB/TrEMBL
    K7K2A6
    Conserved Domains (1) summary
    cd18919
    Location:353 → 438
    bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins

  5. XM_014773825.3 → XP_014629311.1  transcription factor bHLH49 isoform X1

    UniProtKB/TrEMBL
    K7K2A6
    Conserved Domains (1) summary
    cd18919
    Location:353 → 438
    bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins

  6. XM_006573122.4 → XP_006573185.1  transcription factor bHLH49 isoform X2

    Conserved Domains (1) summary
    smart00353
    Location:369 → 418
    HLH; helix loop helix domain
Nucleotide Protein
Heading Accession and Version

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