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NF-YC06 nuclear factor Y transcription factor family protein [ Glycine max (soybean) ]

Gene ID: 100796987, updated on 7-Dec-2023

Summary

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Gene symbol
NF-YC06
Gene description
nuclear factor Y transcription factor family protein
Locus tag
GLYMA_08G165700v4
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
Also known as
GmNF-YC06
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Genomic context

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See NF-YC06 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
2
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 8 NC_038244.2 (13145417..13148664, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 8 NC_038244.1 (13066367..13069614, complement)

Chromosome 8 - NC_038244.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102667107 Neighboring gene DEAD-box ATP-dependent RNA helicase 36 Neighboring gene uncharacterized LOC100799118 Neighboring gene uncharacterized LOC100799639

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide expression analysis of soybean NF-Y genes reveals potential function in development and drought response. Quach TN, et al. Mol Genet Genomics, 2015 Jun. PMID 25542200, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear factor Y transcription factor family protein
Names
nuclear transcription factor Y subunit C-2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001362632.1 → NP_001349561.1  nuclear factor Y transcription factor family protein

    Status: VALIDATED

    Source sequence(s)
    ACUP04002820, BM887238, CK605647, FK001348
    UniProtKB/TrEMBL
    C6TL01, I1KTY0
    Conserved Domains (1) summary
    COG5208
    Location:88 → 187
    HAP5; CCAAT-binding factor, subunit C [Transcription]

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038244.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    13145417..13148664 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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