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LOC100796447 auxin response factor 6 [ Glycine max (soybean) ]

Gene ID: 100796447, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100796447
Gene description
auxin response factor 6
Locus tag
GLYMA_15G091000v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100796447 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
14
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 15 NC_038251.2 (6970484..6977283, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 15 NC_038251.1 (6983439..6990281, complement)

Chromosome 15 - NC_038251.2Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At1g09900 Neighboring gene 60S ribosomal protein L38 Neighboring gene cinnamoyl-CoA reductase 1-like Neighboring gene protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to hormone IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
auxin response factor 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038251.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    6970484..6977283 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006597447.4 → XP_006597510.1  auxin response factor 6 isoform X3

    See identical proteins and their annotated locations for XP_006597510.1

    UniProtKB/TrEMBL
    A0A0R0FY86, A0A0R0FYA1
    Conserved Domains (3) summary
    pfam02309
    Location:673 → 758
    AUX_IAA; AUX/IAA family
    pfam02362
    Location:46 → 148
    B3; B3 DNA binding domain
    pfam06507
    Location:178 → 255
    Auxin_resp; Auxin response factor

  2. XM_003546018.5 → XP_003546066.1  auxin response factor 6 isoform X2

    UniProtKB/TrEMBL
    A0A0R0FY86, K7MAG4
    Conserved Domains (3) summary
    pfam02309
    Location:753 → 838
    AUX_IAA; AUX/IAA family
    pfam02362
    Location:127 → 229
    B3; B3 DNA binding domain
    pfam06507
    Location:259 → 336
    Auxin_resp; Auxin response factor

  3. XM_006597446.4 → XP_006597509.1  auxin response factor 6 isoform X1

    UniProtKB/TrEMBL
    A0A0R0FY86, K7MAG3
    Conserved Domains (3) summary
    pfam02309
    Location:754 → 839
    AUX_IAA; AUX/IAA family
    pfam02362
    Location:127 → 229
    B3; B3 DNA binding domain
    pfam06507
    Location:259 → 336
    Auxin_resp; Auxin response factor
Nucleotide Protein
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