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ABI3-1 B3 domain-containing transcription factor ABI3 [ Glycine max (soybean) ]

Gene ID: 100795226, updated on 7-Dec-2023

Summary

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Gene symbol
ABI3-1
Gene description
B3 domain-containing transcription factor ABI3
Locus tag
GLYMA_08G357600v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See ABI3-1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
6
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 8 NC_038244.2 (46375547..46380124, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 8 NC_038244.1 (47001125..47005613, complement)

Chromosome 8 - NC_038244.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100794171 Neighboring gene LRR receptor-like serine/threonine-protein kinase RGI2 Neighboring gene uncharacterized LOC100795764 Neighboring gene uncharacterized LOC106799680

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Combinatorial interactions of the LEC1 transcription factor specify diverse developmental programs during soybean seed development. Jo L, et al. Proc Natl Acad Sci U S A, 2020 Jan 14. PMID 31892538, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
B3 domain-containing transcription factor ABI3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038244.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    46375547..46380124 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003532261.5 → XP_003532309.1  B3 domain-containing transcription factor ABI3 isoform X2

    UniProtKB/TrEMBL
    A0A0R0IX89, I1KZD3
    Conserved Domains (1) summary
    cd10015
    Location:605 → 706
    BfiI_C_EcoRII_N_B3; DNA binding domains of BfiI, EcoRII and plant B3 proteins

  2. XM_006586209.4 → XP_006586272.1  B3 domain-containing transcription factor ABI3 isoform X1

    UniProtKB/TrEMBL
    I1KZD3
    Conserved Domains (1) summary
    cd10015
    Location:605 → 708
    BfiI_C_EcoRII_N_B3; DNA binding domains of BfiI, EcoRII and plant B3 proteins

  3. XM_014779519.3 → XP_014635005.1  B3 domain-containing transcription factor ABI3 isoform X3

    UniProtKB/TrEMBL
    A0A0R0J311, I1KZD3
    Conserved Domains (1) summary
    cd10015
    Location:578 → 681
    BfiI_C_EcoRII_N_B3; DNA binding domains of BfiI, EcoRII and plant B3 proteins
Nucleotide Protein
Heading Accession and Version

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