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TGA23 bZIP transcription factor [ Glycine max (soybean) ]

Gene ID: 100793353, updated on 7-Dec-2023

Summary

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Gene symbol
TGA23
Gene description
bZIP transcription factor
Locus tag
GLYMA_18G020900v4
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
Also known as
GmTGA23
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Genomic context

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See TGA23 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
11
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 18 NC_038254.2 (1527862..1534848)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 18 NC_038254.1 (1529781..1536504)

Chromosome 18 - NC_038254.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100792830 Neighboring gene uncharacterized LOC100791777 Neighboring gene alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial-like Neighboring gene glutathione hydrolase 1 Neighboring gene uncharacterized LOC100526978

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-Wide Characterization and Expression Analysis of Soybean TGA Transcription Factors Identified a Novel TGA Gene Involved in Drought and Salt Tolerance. Li B, et al. Front Plant Sci, 2019. PMID 31156656, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bZIP transcription factor
Names
transcription factor TGA4-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001254990.3 → NP_001241919.2  bZIP transcription factor

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    ACUP04006208
    UniProtKB/TrEMBL
    C6TJN1, I1MYW1
    Conserved Domains (2) summary
    cd14708
    Location:78 → 130
    bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
    pfam14144
    Location:164 → 238
    DOG1; Seed dormancy control

  2. NM_001371903.1 → NP_001358832.1  bZIP transcription factor

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    ACUP04006208
    UniProtKB/TrEMBL
    C6TJN1, I1MYW1
    Conserved Domains (2) summary
    cd14708
    Location:78 → 130
    bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
    pfam14144
    Location:164 → 238
    DOG1; Seed dormancy control

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038254.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    1527862..1534848
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041011617.1 → XP_040867551.1  bZIP transcription factor isoform X1

    UniProtKB/TrEMBL
    C6TJN1, I1MYW1
    Conserved Domains (2) summary
    cd14708
    Location:78 → 130
    bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
    pfam14144
    Location:164 → 238
    DOG1; Seed dormancy control

  2. XM_014770217.3 → XP_014625703.1  bZIP transcription factor isoform X1

    UniProtKB/TrEMBL
    C6TJN1, I1MYW1
    Conserved Domains (2) summary
    cd14708
    Location:78 → 130
    bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
    pfam14144
    Location:164 → 238
    DOG1; Seed dormancy control

  3. XM_006601750.4 → XP_006601813.1  bZIP transcription factor isoform X1

    See identical proteins and their annotated locations for XP_006601813.1

    UniProtKB/TrEMBL
    C6TJN1, I1MYW1
    Conserved Domains (2) summary
    cd14708
    Location:78 → 130
    bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
    pfam14144
    Location:164 → 238
    DOG1; Seed dormancy control

  4. XM_006601748.4 → XP_006601811.1  bZIP transcription factor isoform X1

    See identical proteins and their annotated locations for XP_006601811.1

    UniProtKB/TrEMBL
    C6TJN1, I1MYW1
    Conserved Domains (2) summary
    cd14708
    Location:78 → 130
    bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
    pfam14144
    Location:164 → 238
    DOG1; Seed dormancy control

  5. XM_006601751.4 → XP_006601814.1  bZIP transcription factor isoform X1

    See identical proteins and their annotated locations for XP_006601814.1

    UniProtKB/TrEMBL
    C6TJN1, I1MYW1
    Conserved Domains (2) summary
    cd14708
    Location:78 → 130
    bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
    pfam14144
    Location:164 → 238
    DOG1; Seed dormancy control

RNA

  1. XR_419290.4 RNA Sequence

  2. XR_005889469.1 RNA Sequence

  3. XR_005889468.1 RNA Sequence

  4. XR_005889471.1 RNA Sequence

  5. XR_005889470.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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