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LOC100792788 uncharacterized LOC100792788 [ Glycine max (soybean) ]

Gene ID: 100792788, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100792788
Gene description
uncharacterized LOC100792788
Locus tag
GLYMA_01G228200v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100792788 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
16
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 1 NC_016088.4 (56731647..56738808)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 1 NC_016088.3 (55631681..55638779)

Chromosome 1 - NC_016088.4Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At4g20770 Neighboring gene transcription factor-like protein DPB Neighboring gene protein SMG9 Neighboring gene uncharacterized LOC100500270

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables TFIIIC-class transcription factor complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA polymerase III preinitiation complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription factor TFIIIB complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC100792788

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016088.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    56731647..56738808
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006573757.3 → XP_006573820.1  uncharacterized protein LOC100792788 isoform X2

    UniProtKB/TrEMBL
    K7K5C8
    Conserved Domains (2) summary
    COG5118
    Location:560 → 840
    BDP1; Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
    pfam15963
    Location:779 → 842
    Myb_DNA-bind_7; Myb DNA-binding like

  2. XM_006573758.3 → XP_006573821.1  uncharacterized protein LOC100792788 isoform X3

    UniProtKB/TrEMBL
    K7K5C9
    Conserved Domains (2) summary
    COG5118
    Location:560 → 840
    BDP1; Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
    pfam15963
    Location:779 → 842
    Myb_DNA-bind_7; Myb DNA-binding like

  3. XM_003516681.4 → XP_003516729.1  uncharacterized protein LOC100792788 isoform X1

    UniProtKB/TrEMBL
    K7K5C7
    Conserved Domains (1) summary
    pfam15963
    Location:779 → 842
    Myb_DNA-bind_7; Myb DNA-binding like
Nucleotide Protein
Heading Accession and Version

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