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LOC100790824 transcription factor bHLH25-like [ Glycine max (soybean) ]

Gene ID: 100790824, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100790824
Gene description
transcription factor bHLH25-like
Locus tag
GLYMA_15G061400v4
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
Also known as
SAT1; nodulin
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Genomic context

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See LOC100790824 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
6
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 15 NC_038251.2 (4718241..4721545)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 15 NC_038251.1 (4731571..4734875)

Chromosome 15 - NC_038251.2Genomic Context describing neighboring genes Neighboring gene peptide methionine sulfoxide reductase B5 Neighboring gene probable sphingolipid transporter spinster homolog 2 Neighboring gene soluble inorganic pyrophosphatase 1, chloroplastic-like Neighboring gene uncharacterized LOC100791353 Neighboring gene transfer RNA valine (anticodon AAC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of an ammonium transport protein from the peribacteroid membrane of soybean nodules. Kaiser BN, et al. Science, 1998 Aug 21. PMID 9712587
  2. Soybean SAT1 (Symbiotic Ammonium Transporter 1) encodes a bHLH transcription factor involved in nodule growth and NH4+ transport. Chiasson DM, et al. Proc Natl Acad Sci U S A, 2014 Apr 1. PMID 24707045, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. GmbHLHm1 influences nodule development and activity and is linked to a novel mechanism for NH4(+) transport common to both yeast and plants.
    Title: Soybean SAT1 (Symbiotic Ammonium Transporter 1) encodes a bHLH transcription factor involved in nodule growth and NH4+ transport.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH25-like
Names
symbiotic ammonium transporter

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001252914.1 → NP_001239843.1  transcription factor bHLH25-like

    See identical proteins and their annotated locations for NP_001239843.1

    Status: PROVISIONAL

    Source sequence(s)
    AF069738
    UniProtKB/TrEMBL
    O81348
    Conserved Domains (1) summary
    cd11452
    Location:171 → 243
    bHLH_AtNAI1_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana protein NAI1 and similar proteins

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038251.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    4718241..4721545
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006596958.4 → XP_006597021.1  transcription factor bHLH25-like isoform X1

    UniProtKB/TrEMBL
    I1ME41
    Conserved Domains (1) summary
    cd11452
    Location:193 → 265
    bHLH_AtNAI1_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana protein NAI1 and similar proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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