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LOC100790620 zinc finger protein NUTCRACKER [ Glycine max (soybean) ]

Gene ID: 100790620, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100790620
Gene description
zinc finger protein NUTCRACKER
Locus tag
GLYMA_06G287200v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100790620 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
3
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 6 NC_038242.2 (47205684..47209005)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 6 NC_038242.1 (47607902..47611388)

Chromosome 6 - NC_038242.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100527118 Neighboring gene uncharacterized LOC100790093 Neighboring gene GDSL esterase/lipase At1g29670 Neighboring gene uncharacterized LOC121175086

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein NUTCRACKER

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038242.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    47205684..47209005
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003526205.5 → XP_003526253.2  zinc finger protein NUTCRACKER

    UniProtKB/TrEMBL
    I1KEW9, I1LS81
    Conserved Domains (1) summary
    sd00017
    Location:64 → 84
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
Heading Accession and Version

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