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HSF-05 heat stress transcription factor 5 [ Glycine max (soybean) ]

Gene ID: 100789792, updated on 7-Dec-2023

Summary

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Gene symbol
HSF-05
Gene description
heat stress transcription factor 5
Locus tag
GLYMA_01G143500v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
Also known as
GMHSF-05
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Genomic context

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See HSF-05 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 1 NC_016088.4 (48818636..48820969)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 1 NC_016088.3 (47711979..47714725)

Chromosome 1 - NC_016088.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100796830 Neighboring gene probable RNA 3'-terminal phosphate cyclase-like protein Neighboring gene uncharacterized LOC113002411 Neighboring gene E3 ubiquitin-protein ligase RING1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide analysis of the Hsf family in soybean and functional identification of GmHsf-34 involvement in drought and heat stresses. Li PS, et al. BMC Genomics, 2014 Nov 21. PMID 25416131, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heat stress transcription factor B-2a
Names
heat stress transcription factor B-2a-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016088.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    48818636..48820969
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003516418.5 → XP_003516466.1  heat stress transcription factor B-2a

    See identical proteins and their annotated locations for XP_003516466.1

    UniProtKB/TrEMBL
    I1J7X9
    Conserved Domains (1) summary
    pfam00447
    Location:35 → 129
    HSF_DNA-bind; HSF-type DNA-binding
Nucleotide Protein
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