U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC100789009 AP2/ERF and B3 domain-containing transcription repressor RAV2 [ Glycine max (soybean) ]

Gene ID: 100789009, updated on 7-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC100789009
Gene description
AP2/ERF and B3 domain-containing transcription repressor RAV2
Locus tag
GLYMA_20G186200v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC100789009 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
1
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 20 NC_038256.2 (42444843..42446268)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 20 NC_038256.1 (42482784..42484206)

Chromosome 20 - NC_038256.2Genomic Context describing neighboring genes Neighboring gene 30S ribosomal protein S16-like Neighboring gene receptor-like protein 4 Neighboring gene uncharacterized LOC102663627 Neighboring gene zinc finger protein WIP6

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
AP2/ERF and B3 domain-containing transcription repressor RAV2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038256.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    42444843..42446268
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003556217.4 → XP_003556265.1  AP2/ERF and B3 domain-containing transcription repressor RAV2

    UniProtKB/TrEMBL
    I1NHL5
    Conserved Domains (2) summary
    smart00380
    Location:59 → 116
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
    pfam02362
    Location:178 → 274
    B3; B3 DNA binding domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases