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LBD20 LBD domain-containing transcription factor [ Glycine max (soybean) ]

Gene ID: 100788656, updated on 18-Aug-2023

Summary

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Gene symbol
LBD20
Gene description
LBD domain-containing transcription factor
Locus tag
GLYMA_05G004400v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LBD20 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 5 NC_038241.2 (369452..371518, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 5 NC_038241.1 (366738..368615, complement)

Chromosome 5 - NC_038241.2Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At5g40400 Neighboring gene oleosin Ara h 14.0103 Neighboring gene uncharacterized LOC121174936 Neighboring gene F-box/kelch-repeat protein At1g55270

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-Wide Analysis of Soybean LATERAL ORGAN BOUNDARIES Domain-Containing Genes: A Functional Investigation of GmLBD12. Yang H, et al. Plant Genome, 2017 Mar. PMID 28464070

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
LOB domain-containing protein 25
Names
LOB domain-containing protein 25-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038241.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    369452..371518 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006579713.3 → XP_006579776.1  LOB domain-containing protein 25

    See identical proteins and their annotated locations for XP_006579776.1

    UniProtKB/TrEMBL
    I1K1K3, K7KNN7
    Conserved Domains (1) summary
    pfam03195
    Location:10 → 108
    LOB; Lateral organ boundaries (LOB) domain

  2. XM_014775378.2 → XP_014630864.1  LOB domain-containing protein 25

    UniProtKB/TrEMBL
    I1K1K3, K7KNN7
    Conserved Domains (1) summary
    pfam03195
    Location:10 → 108
    LOB; Lateral organ boundaries (LOB) domain
Nucleotide Protein
Heading Accession and Version

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