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LOC100787023 homeobox protein HD1 [ Glycine max (soybean) ]

Gene ID: 100787023, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100787023
Gene description
homeobox protein HD1
Locus tag
GLYMA_11G027100v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100787023 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
5
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 11 NC_038247.2 (1942325..1948531, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 11 NC_038247.1 (1947016..1953151, complement)

Chromosome 11 - NC_038247.2Genomic Context describing neighboring genes Neighboring gene molybdenum cofactor sulfurase Neighboring gene putative hydroxymethylglutaryl-CoA synthase Neighboring gene ubiquitin carboxyl-terminal hydrolase MINDY-2 Neighboring gene senescence-inducible chloroplast stay-green protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein HD1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038247.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    1942325..1948531 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003538396.3 → XP_003538444.1  homeobox protein HD1

    See identical proteins and their annotated locations for XP_003538444.1

    UniProtKB/TrEMBL
    A0A0R0HAW9, C6TBT2
    Conserved Domains (3) summary
    pfam03790
    Location:20 → 58
    KNOX1; KNOX1 domain
    pfam03791
    Location:76 → 127
    KNOX2; KNOX2 domain
    pfam05920
    Location:222 → 261
    Homeobox_KN; Homeobox KN domain
Nucleotide Protein
Heading Accession and Version

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