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LOC100786651 AP2-like ethylene-responsive transcription factor At2g41710 [ Glycine max (soybean) ]

Gene ID: 100786651, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100786651
Gene description
AP2-like ethylene-responsive transcription factor At2g41710
Locus tag
GLYMA_19G138000v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100786651 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
9
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 19 NC_038255.2 (40379769..40384069, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 19 NC_038255.1 (39934409..39938654, complement)

Chromosome 19 - NC_038255.2Genomic Context describing neighboring genes Neighboring gene ABC transporter G family member 15-like Neighboring gene heat stress transcription factor 36 Neighboring gene uncharacterized LOC121174108 Neighboring gene pentatricopeptide repeat-containing protein At2g41720-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AP2-like ethylene-responsive transcription factor At2g41710

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038255.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    40379769..40384069 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006604291.4 → XP_006604354.1  AP2-like ethylene-responsive transcription factor At2g41710 isoform X2

    UniProtKB/TrEMBL
    A0A0R0EM32, A0A0R0EWG6
    Conserved Domains (1) summary
    cl00033
    Location:61 → 131
    AP2; DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor ...

  2. XM_003554123.5 → XP_003554171.1  AP2-like ethylene-responsive transcription factor At2g41710 isoform X1

    UniProtKB/TrEMBL
    A0A0R0EM32, I1N8Z8
    Conserved Domains (1) summary
    cl00033
    Location:61 → 131
    AP2; DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor ...
Nucleotide Protein
Heading Accession and Version

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