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LOC100786580 agamous-like MADS-box protein AGL8-like [ Glycine max (soybean) ]

Gene ID: 100786580, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100786580
Gene description
agamous-like MADS-box protein AGL8-like
Locus tag
GLYMA_08G250800v4
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100786580 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
9
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 8 NC_038244.2 (22043845..22056068)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 8 NC_038244.1 (21975127..21987376)

Chromosome 8 - NC_038244.2Genomic Context describing neighboring genes Neighboring gene transcription repressor MYB5-like Neighboring gene agamous-like MADS-box protein MADS2 Neighboring gene ultraviolet-B receptor UVR8 Neighboring gene serine-threonine kinase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
agamous-like MADS-box protein AGL8-like; uncharacterized protein LOC100786580

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001254108.1 → NP_001241037.1  agamous-like MADS-box protein AGL8-like

    See identical proteins and their annotated locations for NP_001241037.1

    Status: PROVISIONAL

    Source sequence(s)
    BT098571
    UniProtKB/TrEMBL
    C6TLI4
    Conserved Domains (2) summary
    cd00265
    Location:2 → 75
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:87 → 160
    K-box; K-box region

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038244.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    22043845..22056068
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006584492.3 → XP_006584555.1  uncharacterized protein LOC100786580 isoform X1

    See identical proteins and their annotated locations for XP_006584555.1

    UniProtKB/TrEMBL
    I1KWI8
    Conserved Domains (2) summary
    cd00265
    Location:2 → 75
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:86 → 170
    K-box; K-box region

  2. XM_006584491.3 → XP_006584554.1  uncharacterized protein LOC100786580 isoform X1

    See identical proteins and their annotated locations for XP_006584554.1

    UniProtKB/TrEMBL
    I1KWI8
    Conserved Domains (2) summary
    cd00265
    Location:2 → 75
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:86 → 170
    K-box; K-box region
Nucleotide Protein
Heading Accession and Version

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