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LOC100786114 homeobox protein knotted-1-like 10 [ Glycine max (soybean) ]

Gene ID: 100786114, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100786114
Gene description
homeobox protein knotted-1-like 10
Locus tag
GLYMA_10G147000v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100786114 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
5
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 10 NC_038246.2 (38389043..38394306)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 10 NC_038246.1 (38230424..38235614)

Chromosome 10 - NC_038246.2Genomic Context describing neighboring genes Neighboring gene RNA polymerase II-associated protein 3-like Neighboring gene protein SEMI-ROLLED LEAF 2 Neighboring gene uncharacterized LOC100786994 Neighboring gene lon protease homolog 1, mitochondrial

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein knotted-1-like 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038246.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    38389043..38394306
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003535996.5 → XP_003536044.1  homeobox protein knotted-1-like 10 isoform X1

    UniProtKB/TrEMBL
    K7LJG7, K7N2L3
    Conserved Domains (4) summary
    pfam03789
    Location:192 → 208
    ELK; ELK domain
    pfam03790
    Location:51 → 89
    KNOX1; KNOX1 domain
    pfam03791
    Location:99 → 146
    KNOX2; KNOX2 domain
    pfam05920
    Location:232 → 271
    Homeobox_KN; Homeobox KN domain

  2. XM_006589056.4 → XP_006589119.1  homeobox protein knotted-1-like 10 isoform X2

    UniProtKB/TrEMBL
    A0A0R0HT81, A0A0R0HTA6
    Conserved Domains (3) summary
    pfam05920
    Location:160 → 199
    Homeobox_KN; Homeobox KN domain
    pfam03789
    Location:120 → 136
    ELK; ELK domain
    pfam03791
    Location:27 → 74
    KNOX2; KNOX2 domain
Nucleotide Protein
Heading Accession and Version

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