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LOC100786044 transcription factor MYB3R-1 [ Glycine max (soybean) ]

Gene ID: 100786044, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100786044
Gene description
transcription factor MYB3R-1
Locus tag
GLYMA_14G143400v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100786044 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
12
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 14 NC_038250.2 (25115852..25125417, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 14 NC_038250.1 (29170595..29180157, complement)

Chromosome 14 - NC_038250.2Genomic Context describing neighboring genes Neighboring gene 18S rRNA (guanine-N(7))-methyltransferase RID2-like Neighboring gene peptidyl-tRNA hydrolase 2, mitochondrial Neighboring gene secreted RxLR effector protein 161-like Neighboring gene protein MAIN-LIKE 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor MYB3R-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038250.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    25115852..25125417 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006596115.4 → XP_006596178.1  transcription factor MYB3R-1 isoform X2

    UniProtKB/TrEMBL
    A0A0R0GDA7
    Conserved Domains (2) summary
    PLN03212
    Location:75 → 201
    PLN03212; Transcription repressor MYB5; Provisional
    pfam13921
    Location:26 → 84
    Myb_DNA-bind_6; Myb-like DNA-binding domain

  2. XM_003545548.5 → XP_003545596.1  transcription factor MYB3R-1 isoform X1

    See identical proteins and their annotated locations for XP_003545596.1

    UniProtKB/TrEMBL
    K7M6R3
    Conserved Domains (2) summary
    PLN03212
    Location:89 → 215
    PLN03212; Transcription repressor MYB5; Provisional
    pfam13921
    Location:40 → 98
    Myb_DNA-bind_6; Myb-like DNA-binding domain
Nucleotide Protein
Heading Accession and Version

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