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LOC100785696 transcription factor bHLH130 [ Glycine max (soybean) ]

Gene ID: 100785696, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100785696
Gene description
transcription factor bHLH130
Locus tag
GLYMA_15G271900v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100785696 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
7
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 15 NC_038251.2 (52902504..52905615, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 15 NC_038251.1 (50912537..50915607, complement)

Chromosome 15 - NC_038251.2Genomic Context describing neighboring genes Neighboring gene thioredoxin-like protein Clot-like Neighboring gene clustered mitochondria protein Neighboring gene SURP and G-patch domain-containing protein 1-like protein Neighboring gene pentatricopeptide repeat-containing protein At5g40410, mitochondrial

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH130

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038251.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    52902504..52905615 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006598189.3 → XP_006598252.2  transcription factor bHLH130 isoform X2

    UniProtKB/TrEMBL
    I1MJM2, K7ME64
    Conserved Domains (1) summary
    cd11393
    Location:383 → 436
    bHLH_AtbHLH_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana genes coding transcription factors and similar proteins

  2. XM_014767388.3 → XP_014622874.1  transcription factor bHLH130 isoform X1

    UniProtKB/TrEMBL
    I1MJM2
    Conserved Domains (1) summary
    cd11393
    Location:383 → 434
    bHLH_AtbHLH_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana genes coding transcription factors and similar proteins

  3. XM_014767389.2 → XP_014622875.1  transcription factor bHLH130 isoform X3

    UniProtKB/TrEMBL
    A0A0R0GE08, I1MJM2
    Conserved Domains (1) summary
    cd11393
    Location:372 → 423
    bHLH_AtbHLH_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana genes coding transcription factors and similar proteins
Nucleotide Protein
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