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LOC100785458 protein YABBY 12 [ Glycine max (soybean) ]

Gene ID: 100785458, updated on 7-Dec-2023

Summary

Gene symbol
LOC100785458
Gene description
protein YABBY 12
Locus tag
GLYMA_12G190500v4
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
Also known as
GmYABBY12
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Genomic context

See LOC100785458 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
10
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 12 NC_038248.2 (36660272..36670462, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 12 NC_038248.1 (35206658..35216799, complement)

Chromosome 12 - NC_038248.2Genomic Context describing neighboring genes Neighboring gene putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 Neighboring gene ubiquitin carboxyl-terminal hydrolase 8 Neighboring gene protein STRICTOSIDINE SYNTHASE-LIKE 3 Neighboring gene fasciclin-like arabinogalactan protein 15

Genomic regions, transcripts, and products

General protein information

Preferred Names
protein YABBY 12
Names
putative axial regulator YABBY 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001289229.1NP_001276158.1  protein YABBY 12

    See identical proteins and their annotated locations for NP_001276158.1

    Status: PROVISIONAL

    Source sequence(s)
    BT095127
    UniProtKB/TrEMBL
    A0A0R0H716, C6TC48
    Conserved Domains (1) summary
    pfam04690
    Location:7158
    YABBY; YABBY protein

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038248.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    36660272..36670462 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006592733.4XP_006592796.1  protein YABBY 12 isoform X2

    UniProtKB/TrEMBL
    A0A0R0HGY2
    Conserved Domains (1) summary
    pfam04690
    Location:7145
    YABBY; YABBY protein
  2. XM_006592732.4XP_006592795.1  protein YABBY 12 isoform X1

    UniProtKB/TrEMBL
    A0A0R0HG89
    Conserved Domains (1) summary
    pfam04690
    Location:7147
    YABBY; YABBY protein
  3. XM_003540236.5XP_003540284.1  protein YABBY 12 isoform X4

    UniProtKB/TrEMBL
    A0A0R0H716, A0A0R0H7E7
    Conserved Domains (1) summary
    pfam04690
    Location:7156
    YABBY; YABBY protein
  4. XM_041007079.1XP_040863013.1  protein YABBY 12 isoform X8

    UniProtKB/TrEMBL
    A0A0R0H7U0
    Conserved Domains (1) summary
    cd00084
    Location:90117
    HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...
  5. XM_041007077.1XP_040863011.1  protein YABBY 12 isoform X6

    UniProtKB/TrEMBL
    I1LU19
    Conserved Domains (1) summary
    cd00084
    Location:92119
    HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...
  6. XM_041007075.1XP_040863009.1  protein YABBY 12 isoform X3

    Conserved Domains (1) summary
    cd00084
    Location:108135
    HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...
  7. XM_041007078.1XP_040863012.1  protein YABBY 12 isoform X7

    UniProtKB/TrEMBL
    A0A0R0H7U0
    Conserved Domains (1) summary
    cd00084
    Location:92119
    HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...
  8. XM_041007076.1XP_040863010.1  protein YABBY 12 isoform X5

    UniProtKB/TrEMBL
    I1LU19
    Conserved Domains (1) summary
    cd00084
    Location:94121
    HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...