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LOC100784225 zinc finger CCCH domain-containing protein 30 [ Glycine max (soybean) ]

Gene ID: 100784225, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100784225
Gene description
zinc finger CCCH domain-containing protein 30
Locus tag
GLYMA_12G237300v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100784225 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
2
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 12 NC_038248.2 (41055098..41058937)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 12 NC_038248.1 (39613207..39618868)

Chromosome 12 - NC_038248.2Genomic Context describing neighboring genes Neighboring gene cellulose synthase A catalytic subunit 3 [UDP-forming] Neighboring gene uncharacterized LOC100783695 Neighboring gene protein DETOXIFICATION 43 Neighboring gene protein DETOXIFICATION 43

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger CCCH domain-containing protein 30

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038248.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    41055098..41058937
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003540481.5 → XP_003540529.1  zinc finger CCCH domain-containing protein 30

    UniProtKB/TrEMBL
    I1LVD6
    Conserved Domains (3) summary
    smart00356
    Location:275 → 299
    ZnF_C3H1; zinc finger
    sd00045
    Location:10 → 42
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:19 → 126
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein
Heading Accession and Version

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