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LOC100784129 homeobox-leucine zipper protein HAT22 [ Glycine max (soybean) ]

Gene ID: 100784129, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100784129
Gene description
homeobox-leucine zipper protein HAT22
Locus tag
GLYMA_01G196600v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100784129 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 1 NC_016088.4 (54199240..54201027)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 1 NC_016088.3 (53086671..53088487)

Chromosome 1 - NC_016088.4Genomic Context describing neighboring genes Neighboring gene branched-chain amino acid aminotransferase 2, chloroplastic Neighboring gene uncharacterized LOC100813351 Neighboring gene probable xyloglucan endotransglucosylase/hydrolase protein 6 Neighboring gene EPIDERMAL PATTERNING FACTOR-like protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox-leucine zipper protein HAT22

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016088.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    54199240..54201027
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003517316.5 → XP_003517364.1  homeobox-leucine zipper protein HAT22

    UniProtKB/TrEMBL
    C6TNB1, I1J9H4
    Conserved Domains (2) summary
    smart00340
    Location:194 → 237
    HALZ; homeobox associated leucin zipper
    smart00389
    Location:138 → 192
    HOX; Homeodomain
Nucleotide Protein
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