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LOC100783582 transcription factor bHLH57 [ Glycine max (soybean) ]

Gene ID: 100783582, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100783582
Gene description
transcription factor bHLH57
Locus tag
GLYMA_16G017700v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100783582 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
5
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 16 NC_038252.2 (1565342..1568414, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 16 NC_038252.1 (1576775..1580055, complement)

Chromosome 16 - NC_038252.2Genomic Context describing neighboring genes Neighboring gene anthranilate N-methyltransferase-like Neighboring gene protein CURVATURE THYLAKOID 1B, chloroplastic Neighboring gene metal tolerance protein 1-like Neighboring gene NDR1/HIN1-like protein 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in guard cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH57

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038252.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    1565342..1568414 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006598803.4 → XP_006598866.1  transcription factor bHLH57 isoform X2

    See identical proteins and their annotated locations for XP_006598866.1

    UniProtKB/TrEMBL
    A0A0R0JA96, K7MEP1
    Conserved Domains (1) summary
    cd11448
    Location:186 → 252
    bHLH_AtFAMA_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana protein FAMA and similar proteins

  2. XM_026126205.2 → XP_025981990.1  transcription factor bHLH57 isoform X1

    UniProtKB/TrEMBL
    A0A0R0JA96
    Conserved Domains (1) summary
    pfam00010
    Location:190 → 241
    HLH; Helix-loop-helix DNA-binding domain

  3. XM_006598804.4 → XP_006598867.1  transcription factor bHLH57 isoform X3

    UniProtKB/TrEMBL
    A0A0R0FK06, A0A0R0JA96
    Conserved Domains (1) summary
    cd11448
    Location:138 → 204
    bHLH_AtFAMA_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana protein FAMA and similar proteins
Nucleotide Protein
Heading Accession and Version

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